chr11:27676827:T>C Detail (hg38) (BDNF)

Information

Genome

Assembly Position
hg19 chr11:27,698,374-27,698,374 View the variant detail on this assembly version.
hg38 chr11:27,676,827-27,676,827

HGVS

Type Transcript Protein
RefSeq NM_170731.4:c.4-18242A>G
NM_001709.4:c.-21-18242A>G
NM_001143806.1:c.-21-18242A>G
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.198
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 113505 OMIM
HGNC 1033 HGNC
Ensembl ENSG00000176697 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv42010519 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.003 Methamphetamine abuse To test the hypothesis that the BDNF gene polymorphism is involved in methamphet... BeFree 25764907 Detail
Annotation

Annotations

DescrptionSourceLinks
To test the hypothesis that the BDNF gene polymorphism is involved in methamphetamine abuse, we comp... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs16917234 dbSNP
Genome
hg38
Position
chr11:27,676,827-27,676,827
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs16917234
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.1975
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
3309
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16758
Genome browser